jonahcullen Goto Github PK
Name: Jonah Cullen
Type: User
Company: University of Minnesota
Location: Minneapolis, MN
Name: Jonah Cullen
Type: User
Company: University of Minnesota
Location: Minneapolis, MN
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Camoco is a fully-fledged software package for building co-expression networks and analyzing the overlap interactions among genes.
Cromwell/WDL wrapper for Python
The gene CO-expression Browser
A cookiecutter template for Snakemake workflows
This Snakemake pipeline implements the GATK best-practices workflow
Some scripts to pull the canonical FASTA file from NCBI and make it nice
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Documentation archive for GATK tools and workflows
GRIDSS: the Genomic Rearrangement IDentification Software Suite
GTEx & TOPMed data production and analysis pipelines
Generating a data framework for B-cell and T-cell receptor sequencing data using network analysis from which biological information may be derived
imNet: a Sequence Network Construction Toolkit
Make nice and generate EC3 indices.
Instructor Training
IMGT segment library converted to RepSeq.IO JSON format
This repository was created to assist with the reproducibility of all of the analyses presented in the published lncRNA time course manuscript.
Genetic coordinates so simple, it feels like MAGIC!
Freeze and integrate biological datasets.
An error correction tool for miRNA reads at single-base resolution
Aggregate results from bioinformatics analyses across many samples into a single report.
Muscle Fat Tissue Network Comparison
parallel fastq-dump wrapper
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.