johnmcma Goto Github PK
Name: John Ma
Type: User
Company: BioLegend, Inc
Location: San Diego, CA
Name: John Ma
Type: User
Company: BioLegend, Inc
Location: San Diego, CA
CL python script to reformat CITEATAC fastqs for kite (kallisto | bustools) processing
A reimplementation of BioPerl's Primer3-related code for primer3 v1 and v2
Official git repository for Biopython (converted from CVS)
chromatin Variability Across Regions (of the genome!)
DNA copy number detection from off-target sequence data
Using a bubble chart to demonstrate that from a dataset of 1,157 baseball players, right-handed players have lower batteling average and home run counts.
Extending R's Dendrogram Functionality
The Variant Effect Predictor predicts the functional effects of genomic variants
Ultraperformant reimplementation of SICER
Differential peak calling tool for ChIP-seq data
HLA predictions from NGS shotgun data
3D hotspot mutation proximity analysis tool
A powerful open source data warehouse system
Summarize, Analyze and Visualize MAF files from TCGA or in house studies.
MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.
Python and C++ code for reading and writing genomics data.
Precision HLA typing from next-generation sequencing data
Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
phasing and Allele Specific Expression from RNA-seq
Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.
wrapper for single cell transcriptomics pipeline with kallisto
SCITO-seq related, forked from original code
R toolkit for single cell genomics
TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data
Simple vcf parser, based on PyVCF
A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.
Plugins for the Ensembl Variant Effect Predictor (VEP)
Filtering of PDX samples for mouse derived reads
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.