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🚀 About Me

🎓 I am John Abbey and I am an R Developer specializing in writing software for Imaging Proteomics technologies. I have a Bachelors (UCD) and Masters (ETHZ) in Biochemistry.

👨‍💻 Current projects I am working on include writing an R package called gutenTAG for the Bodenmiller Lab to facilitate robust and efficient processing and analysis of Mass Spectrometry Imaging data, as well as a companion RShiny app to facilitate interactive visualisation of metapeaks and the generated images. These tools are being used by the Functional Genomics Center Zurich (FGCZ), the state-of-the-art research facility providing support for labs at ETH Zurich and the University of Zurich.

🎸 Outside the work, I have many hobbies that help me to decompress. My hobbies range from sporty ones such as running, snowboarding & skiing and Brazillian Jiu Jitsu, to the more relaxing ones such as playing guitar and reading, typically history, philosophy or some fiction 📚.

🛠️ Skills

Languages

python R

Packages

Tensorflow Keras scikit-learn Pandas NumPy scanpy

ggplot2 tidyverse Rshiny RMarkdown seurat

Design Tools

adobe-illustrator adobe-indesign adobe-lightroom

Testing

testthat

📈 Stats

John's GitHub stats

🔗 Links

resume linked-in github

John Abbey's Projects

imcrtools icon imcrtools

An R package for handling and analysing imaging mass cytometry data

shinytag icon shinytag

An R Shiny app for viewing the output of MALDI-IHC experiments processed by gutenTAG

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