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johli's Projects

aparent icon aparent

APA Regression Net - Predict and Engineer Alternative Polyadenylation

aparent-perturb icon aparent-perturb

A multi-task neural network for predicting perturbation responses to Alternative Polyadenylation usage levels

baskerville icon baskerville

Machine learning methods for DNA sequence analysis.

genesis icon genesis

Deep Exploration Networks - Diverse Deep Generative Models for DNA, RNA and Protein Sequences

genesis_kl icon genesis_kl

KL-bounded activation-maximizing generative neural networks for biological sequence design

isolearn icon isolearn

Automated loading and processing of genomics data for Deep Learning

scrambler icon scrambler

Interpretation by Deep Generative Masking for Biological Sequences

seqprop icon seqprop

Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor

splirent icon splirent

Splicing Regression Net - Predict Cell type-specific Splicing Proportions

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