jo-mc Goto Github PK
Type: User
Company: University Of Adelaide - Bioinformatics
Type: User
Company: University Of Adelaide - Bioinformatics
assembly depth histogram creation
explore consecutive zero depths in bio alignments
look at bam view output vs ref
notes on bh22
useful commands for quickly looking at bio data
not quite oneliners but useful and reusable
make a bookdown in gtihub
Scripts and Apps to complement CARP - Comprehensive ab initio Repeat Pipeline for genomes. Lu Zeng et.a.l 2018
analyse SAM file cigar strings.
use R to process output of correll and plot performance of ratatosk correction.
find matching reads in polished vs unpolished data files (from CigarRegSPlit)
Take reads from a bam file and display along side the reference sequence in a bash terminal. (a text IGV for reads) [uses samtools]
example applications built using bíogo
rolling stats
tool for genome - genome analysis (ie denove assembly to a reference)
json and xml implementations with some html/javascript to display.
Git collaboration workshop
Intergalactic Workflow Commission
Monorepo with JBrowse 2 web, JBrowse 2 desktop, and more.
project website - https://jo-mc.github.io/
Long read aligner
Machine Learning with Digital Signal Processing
running statistics calculator
combining pipe + rstat functionality
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