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ansible-module-infoblox

Awesome infobox module for ansible

auth

bambi

A set of programs to manipulate SAM/BAM/CRAM files, using HTSLIB

bcviz

JavaScript visualisation for bamcheck file format

containers

Singularity and Docker material

dalliance

Interactive web-based genome browser.

diskfree_record

Records requested df results in an sqlite database, and displays it in a time range using an ascii chart

ga4gh-streaming-tester

A tester for the GA4GH bulk data streaming API.

genotyping

Components of the WTSI genotype analysis pipeline.

htsget

GA4GH streaming data protocol client

htsget-compliance

Compliance testing for htsget deployments

igv.js

Lightweight html5 version of the Integrative Genomics Viewer

jbrowse

A modern genome browser built with JavaScript and HTML5.

js_tag_validator

lmu_tests

longue_vue

A QC user interface for long-read QC

miqscoreshotgunpublic

Repo for public-facing shotgun MIQ score

ml_warehouse

Perl DBIx binding to a warehouse housing data from multiple LIM systems

mongo-kube

Deploy a Highly-Available MongoDB replica set as StatefulSet on Kubernetes

ncov2019-artic-nf

A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019 - adapted to run at the Wellcome Sanger Institute

npg-irods-python

Applications for the management of data and metadata in iRODS

npg_conda

NPG Conda recipes and tools

npg_irods

Tools for managing HTS (BAM and CRAM) format files in iRODS.

npg_langqc

npg_ml_warehouse

Analysis results loader for the multi-lims warehouse, see ml_warehouse project for the warehouse details.

npg_qc

QC checks and metrics for Illumina NGS data

npg_qc_docs

Nice user documentation for npg_qc

npg_qc_utils

C programs extracted from npg_qc

npg_ranger

Fork from wtsi-npg

npg_sequencescape_warehouse

Old sequencescape warehouse: DBIx binding, loader, LIMs driver for st::api::lims