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checklisttools

A collection of Python scripts to facilitate work with ENA sample checklists

collectionbatchtool

Python library for importing, exporting, and updating batches of collection data in Specify

countrecordrefs

Command-line utility for counting related records in a MySQL database

covid-portal

Portal for Swedish datasets related to covid-19

dendropy

A Python library for phylogenetic scripting, simulation, data processing and manipulation.

fega-encryption-workflow

A Snakemake workflow for encrypting files before uploading them to the Swedish node of the European Federated Genome-Phenome Archive (FEGA-SE).

fega-onboarding

Collection of onboarding materials for establishing a Federated EGA Node.

geocoding-survey

Geospatial data for some natural history collections in Sweden (in Swedish)

nodepath

Tree manipulation with pandas

pandas-charm

Python library for getting character matrices (alignments) into and out of pandas

pandas-validation

A small Python library for validating data with pandas

predsim

Simulate predictive datasets from MrBayes' output

rdm-guidelines

This is the repository for SciLifelab Research Data Management (RDM) guidelines, a central resource to provide information about data management.

rdmkit

ELIXIR Data Management Toolkit

recipe

updatespecifyrefs

Command-line utility for updating record references in a Specify database