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jmchilton Goto Github PK

followers: 86.0 following: 17.0 repos: 184.0 gists: 83.0

Name: John Chilton

Type: User

Company: Penn State University

Bio: Research software developer for @galaxyproject and co-founder of @common-workflow-language. I turn McDonald's hash browns into pull requests.

Twitter: jmchilton

Location: Pittsburgh, PA

John Chilton's Projects

2015-bosc icon 2015-bosc

Abstract and presentation material for the Biometrics Open Source Conference 2015

ansible-galaxy icon ansible-galaxy

An Ansible role for managing a Galaxy (http://galaxyproject.org) server.

ansible-galaxy-os icon ansible-galaxy-os

An Ansible role is for configuring the base operating system useful for running Galaxy.

ansible-galaxy-toolshed icon ansible-galaxy-toolshed

An Ansible role for managing a Galaxy (http://galaxyproject.org) Tool Shed server. For a role to install Galaxy itself, see https://github.com/galaxyproject/ansible-galaxy

auto-mulled icon auto-mulled

Generating Docker containers from bioconda on the fly with Travis cron-job feature.

bamtools icon bamtools

Collection of Galaxy wrappers for Bamtools

bcbio-nextgen icon bcbio-nextgen

Best-practice pipelines for fully automated high throughput sequencing analysis

bioblend icon bioblend

A python library for interacting with CloudMan and Galaxy API

biocloudcentral icon biocloudcentral

Easily launch CloudMan and CloudBioLinux clusters with no manual configuration

biopython icon biopython

Official git repository for Biopython (converted from CVS)

clj-blend icon clj-blend

Clojure library for interacting with Galaxy, CloudMan, and BioCloudCentral, built on blend4j

cloudbiolinux icon cloudbiolinux

CloudBioLinux: configure virtual (or real) machines with tools for biological analyses

cloudbiolinux-deployer icon cloudbiolinux-deployer

This project is meant to be used to launch a VM, configured it via a CloudBioLinux flavor (with initial focus on Galaxy and CloudMan), and upload data to it. This project is the successor of the galaxy-vm-launcher.

cloudman icon cloudman

git repo tracking the Galaxy project's CloudMan mercurial repository at https://bitbucket.org/galaxy/cloudman

cloudman_openstack_bootstrap icon cloudman_openstack_bootstrap

This project contains a set of scripts and config files I am using to configure CloudMan for MSI's private OpenStack cloud.

collectl icon collectl

Fork of collectl taliored for applications at MSI.

conda-iuc icon conda-iuc

Conda recipes maintained by the Galaxy IUC.

cv icon cv

The source code for my CV/resume.

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