ai-for-beginners

12 Weeks, 24 Lessons, AI for All!

alignment-tool-index

This is for creating the alignment tools genome index

artemis2024

astools

This study is using scRNA-seq to study the expression and regulation of alternative splicing (AS) events in single cells

automatic-cell-counting-with-tws

A repository for the suite of scripts I use to perform automatic cell quantification.

awesome

Awesome resources on Bioinformatics, data science, machine learning, programming language (Python, Golang, R, Perl) and miscellaneous stuff.

awesome-bio-ml-pku

This is a repo that includes some resources about machine learning and the application in biology. We are students/alumni of Peking University.

awesome-single-cell

List of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

basic-libraries-in-python

This repository concludes the basic libraries in python such as Numpy, Matplotlib, Pandas and Sklearn in Machaine Learning (ML).

bioconda-recipes

Conda recipes for the bioconda channel.

biocondai

bioinfo_leetcode

让我们以刷LeetCode题目的形式，来编程解决生物信息学问题吧，Come on

bioinformatics-for-beginners

This markdown dives into the exciting field where biology meets computer science. We'll explore the fundamentals of bioinformatics, introduce basic coding concepts in Python and R, and provide a glimpse into the world of Linux, equipping you with the tools to navigate this ever-evolving discipline.

celr-d-22-00015

Repository that contains the analysis from Li et al. Cell Regeneration, 2022.

chip-seq-analysis

cnvkit

Copy number variant detection from targeted DNA sequencing

cnvnator

a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads

combinatorialhic

Scripts + resources for analyzing combinatorial Hi-C data

condensate-analysis

image analysis for protein condensate

copy-number-analysis

This shell script is for analysing the DNA copy number via WGS data

csu-thesis-endnote

endnote style of CSU thesis

ct-analysis

Circuit topology in cancer genome

deep-learning-in-genomics

This repository appears to be dedicated to exploring the application of deep learning techniques in the field of genomics.

deeplearning-biology

A list of deep learning implementations in biology

deeptools

Tools to process and analyze deep sequencing data.

fmd5sum

Made the md5sum faster and install on [PyPi](https://pypi.org/project/fmd5sum/)

free-programming-books-zh_cn

:books: 免费的计算机编程类中文书籍，欢迎投稿

ge2ub

R script for predicting the ubiquitin by gene expression matrix

gene2protein

Predicting the protein level with gene expression

genome_topology

Topological analysis of genome folds based on Circuit Topology and Network Topology