jimmyliu1326 Goto Github PK

bat_guano_bc

bioseqenv

cans

Consensus calling for Amplicon Nanopore Sequencing

cbw23_idge_module5

cedar_docs

cgmlst-dists

🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables

cidgoh_docker_2023

cidgoh_qc

Workflow for quality check for NGS data

deployed_class_app

docker_ci_demo

dzapi_convert

Automated conversion of Dz API natives in war3map.j

group_08_adult-income-1

STAT547 Group project for Group-8, working with adult income data

hpsuissero

Rapid Haemophilus parasuis serotyping pipeline for Nanpore data

ide2021_integrated_hw

ide_2021

influenzananopore

Influenza A Full-Length Consensus Calling for Nanopore Sequencing Data

ispcr

Rapid local alignment search by in silico PCR

jimmyliu1326

Config files for my GitHub profile.

lt_senterica

Rapid Localized Identification of Salmonella Molecular Linkages in Public Foodborne Pathogen Sequence Repositories

mbb_mgwas

msa-vis

Publication-grade visualizations for multiple sequence alignments

phl_snakemake_demo

Snakemake tutorial materials for Sequencing Workshop

salmonella_wgs

samnsero_nextflow

Bacterial Genomics Workflow for Infectious Disease Diagnostics and Surveillance

samnsorter

Fast assortment of Salmonella genomes into stable clusters using phylogenetic placement and kNN classifier

seqdb

Local Sequence Database Management Functions

ssuissero

Rapid Streptococcus suis Serotyping on Nanopore Sequencing Data

ssuisserotyping_pipeline

A pipeline for determining serotype, MLST, and virulence factors of Streptococcus suis.

taxonkit

A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies

tcans

Consensus calling for tiling amplicon nanopore sequencing