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followers: 18.0 following: 10.0 repos: 27.0 gists: 1.0

Name: Darren J. Lin

Type: User

Company: University of Washington

Bio: Developing algorithms for structure variants detection and variation graphs.

Location: Seattle

Darren J. Lin's Projects

aclust

streaming, flexible agglomerative clustering

bamqc

Mapped QC analysis program

bioconda-recipes

Conda recipes for the bioconda channel.

canopy

Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.

comparstra-parser

Scripts used to compare SVs detected from long read and long read assembly

crossstitch

Code for phasing SVs with SNPs

deepsimulator

The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.

dnaplotlib

DNA plotting library for Python

dwgsim

Whole Genome Simulator for Next-Generation Sequencing

e-mem

E-MEM: efficient computation of maximal exact matches for very large genomes

flame-algorithm-flexible-and-accurate-motif-detector

Paper: Efficient and Accurate Discovery of Patterns in Sequence Datasets

genomation

R package for genomic feature analysis and visualization

goenrich

GO enrichment with python -- pandas meets networkx

googleinterview

some google interview coding questions

gspan

Python implementation of frequent subgraph mining algorithm gSpan. Directed graphs are supported.

inductive_max_margin

Graph based linear model regularization

javaguide

【Java学习+面试指南】一份涵盖大部分Java程序员所需要掌握的核心知识。

mako

A graph-based pattern growth approach for CSV discovery

markdown-here

Google Chrome, Firefox, and Thunderbird extension that lets you write email in Markdown and render it before sending.

msifromhe

predict microsatellite status from hematoxylin-eosin histology of gastrointestinal cancer

pybamer

Capture Coverage and Read Length Statistics BAM files

samplot

Plot structural variant signal form a BAM

scissor

A flexible complex genome rearrangement simulator

svisionutils

SVision help functions

svpluscnv

Integrative analysis of complex structural variants

svtyper

Bayesian genotyper for structural variants

wfmash

base-accurate DNA sequence alignments using WFA and mashmap2

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Darren J. Lin's Projects

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