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apis

Initial version of Automated Phylogenetic Inference System in preparation for public release

bioseq

Bioinformatics Library for Crystal

bwa16

!6S pipeline for mapping against a known consortium using BWA

bzip

Bzip::Reader for reading bz2 files in Crystal

cipphyloseq

Add on routines to the R "phyloseq" package developed by the C

cl-tutor

Common Lisp learning system built on lem

emacs.d

fpdf

Ruby FPDF - PDF generation library for Ruby

frenchrevcal-ruby

Routines for converting standard dates into the French Revolutionary Calendar

homebrew

:beer: The missing package manager for OS X.

jams-singularity

Singularity container for JAMS

lfr

Lisp-flavored Ruby

llr

Lisp-like-R: A lisp that compiles to R in R

lumen

A Lisp for Lua and JavaScript

mathics

a general-purpose computer algebra system

microbiomer

Utility routines for graphing/analyzing mothur output

mothur_process

scripts for processing mothur data at NCI

nand2tetris

My workthrough of of the nand2tetris online course

newick-ruby

Routines for manipulating Newick Format phylogenetic trees in Ruby

nimbioseq

Nim Library for sequence (protein/nucleotide) bioinformatics

packages

List of packages for Nimble

paip

phylodb_update

Scripts for maintaining JCVI phylodb database

phylofasta

wrappers around popular phylogenetic programs so that they take aligned FASTA files as input

phylogenetics.jl

The Julia package for analysis of evolution and phylogeny

pico8-stuff

various pico-8 games I've writing

pygentek

Beginnings of a wxPython application for expression and microbiome analysis

python-tcod

The Python port of libtcod. Includes the python-tdl and libtcodpy modules.

rouge

Ruby + Clojure = Rouge

scripts

Collection of (mostly bioinformatics) scripts that I use in day-to-day work