jgasmits Goto Github PK
Name: Jos Smits
Type: User
Company: Radboud university
Jos Smits's Projects
ananse
Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed installation instructions and usage examples. http://anansepy.readthedocs.io
ananseseurat
Single cell ANANSE Gene-regulatory-network analysis from Seurat objects
anansnake
Automate long-running ANANSE analyses with snakemake
deseq2science
ggplot2
An implementation of the Grammar of Graphics in R
ggpubr
'ggplot2' Based Publication Ready Plots
gimmemotifs
Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed installation instructions and usage examples.
heterogeneity-of-differentiating-hpsc-derived-corneal-limbal-stem-cells-through-scrnaseq
regulatory-networks-in-epidermal-and-corneal-epithelia
code files related to the manuscript: Cell identity control coordinated by common and distinct transcription factors and associated gene regulatory networks in epidermal and corneal epithelia
seq2science
Automated preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and RNA-seq workflows.
snapatac
Analysis Pipeline for Single Cell ATAC-seq
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