jethror1 Goto Github PK
Name: Jethro Rainford
Type: User
Company: Cambridge University Hospitals
Bio: Clinical bioinformatician at Cambridge University Hospitals
Location: Cambridge, UK
Jethro Rainford's Projects
advent_of_code
athena
Provides HTML reports with detailed coverage analysis for clinical NGS data.
bedtools2
bedtools - the swiss army knife for genome arithmetic
biol60860_variant_db
Repo for BIOL60860 IT for Advanced Binfx variant database
book-notes
notes on books that I should probably try and remember
dias_batch_running
dnanexus_test_apps
Random tiny apps for testing DNAnexus
dx-streaming-upload
The DNAnexus incremental upload script packaged as an Ansible Role
dx_app_github_actions_test
gatk
Official code repository for GATK versions 4 and up
igv-reports
Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
igv.js
Embeddable genomic visualization component based on the Integrative Genomics Viewer
intro-to-plotly
CodeSchool session on Intro to Plotting with Plotly in Python
megaqc
Web application to collect and visualise data across multiple MultiQC runs.
mosdepth
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
multiqc
Aggregate results from bioinformatics analyses across many samples into a single report.
papers
random_things
dump of single files etc that don't belong in their own repo but need to be somewhere
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