jdidion Goto Github PK
Name: John Didion
Type: User
Bio: I am a programmer and bioinformatician. I develop and contribute to several open-source genomics projects.
Twitter: jdidion
Location: Livermore, CA
Blog: http://john.didion.net
Name: John Didion
Type: User
Bio: I am a programmer and bioinformatician. I develop and contribute to several open-source genomics projects.
Twitter: jdidion
Location: Livermore, CA
Blog: http://john.didion.net
Default community-health files for my repos
An NGS read trimming tool that is specific, sensitive, and speedy. (production)
MultiQC plugin for Atropos. (beta)
My audio drama feeds OPML
Create Click-based CLIs from python3 type annotations (beta)
A curated list of nextflow based pipelines
Conda recipes for the bioconda channel.
A list of useful bioinformatics resources
Use the twitter API to block muted IDs, and vice-versa
migrate from Chrome bookmarks to Raindrop
fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome
Reimplementation of BWA alt-aware post-processing in Rust
Persistent, stale-free, local and cross-machine caching for Python functions.
Framework for creating career ladders
Cell Line Authentication by SNP Profiling (CLASP). (production)
Create Click CLIs with type annotations (Moved -> AutoClick)
Released CWL v1.2 specification
Java SDK for CWL
Common Workflow Language reference implementation
Utilities for differential expression testing. (beta)
Developments in next generation sequencing: instruments, read lengths, throughput. See
Parse python docstrings (beta)
Generic base class for batch programs. (unsupported)
Apps to build your app/applet/asset from source in a containerized environment.
A GitHub action to compile a WDL workflow using dxCompiler
Some useful plots for genomic data, in base R. (beta)
Compare speed of FASTQ vs uBAM for various applications
A simple, flexible, and extensible RSS and Atom parser for Ruby. Based on the popular SimpleRSS library, but with many nice extra features. (retired)
Fun with Bioinformatics Algorithms in Rust
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.