jctourtellotte Goto Github PK
Type: User
jctourtellotte's Projects
binless
Resolution-independent normalization of Hi-C data
bioinformatics-one-liners
Bioinformatics one liners from Ming Tang
bootcamp
Biocore bootcamp
bsub
Send R code/R scripts/shell commands to LSF cluster without leaving R
chromosight
Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps
conos
R package for the joint analysis of multiple single-cell RNA-seq datasets
cooler_genes
A cool place to store your Hi-C
docker-4dn-hic
Docker for 4DN Hi-C processing pipeline
docker-4dn-re-checker
e_coli_analysis
Relates to the article by Lioy, Cournac et al., Cell, 2018 (Functional partitioning of a bacterial chromosome through the interplay of nucleoid- associated proteins and the condensin MukBEF)
hic-data-analysis-bootcamp
Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.
hiclib-legacy
A legacy repository. Was replaced by distiller, cooler, and cooltools.
pairtools
CLI tools to process mapped Hi-C data
pyflow-chipseq
a snakemake pipeline to process ChIP-seq files from GEO or in-house
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