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acfs

A pipeline for de novo circRNA identification

ampliconarchitect

AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and elucidates the architecture of the amplicon. In the current version, AA takes as input next generation sequencing reads (paired-end Illumina reads) mapped to the hg19/GrCH37 reference sequence and one or more regions of interest. This is development version. Please "watch" this repository for production release and methods manuscript soon.

analysis-workflows

MGI's Analysis Workflows and Pipelines managed by the BGA group.

angularplasmid

DNA Plasmid Visualization Component using AngularJS

anime4k

A High-Quality Real Time Upscaler for Anime Video

aracne-ap

Network Reverse Engineering through AP inference of Mutual Information

asprintf.c

asprintf() implementation

atac_dnase_pipelines

ATAC-seq and DNase-seq processing pipeline

autocat

awesome-bioinformatics

A curated list of awesome Bioinformatics libraries and software.

awesome-biology

Curated list of resources for Biology.

awesome-command-line-apps

:shell: Use your terminal shell to do awesome things.

awesome-deep-learning

A curated list of awesome Deep Learning tutorials, projects and communities.

awesome-jupyter

A curated list of awesome Jupyter projects, libraries and resources

awesome-nextflow

A curated list of nextflow based pipelines

awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

awesome-python

A curated list of awesome Python frameworks, libraries, software and resources

awesome-r

A curated list of awesome R packages, frameworks and software.

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

awesome-sysadmin

A curated list of amazingly awesome open source sysadmin resources inspired by Awesome PHP.

awesome-tensorflow-chinese

Awesome-TensorFlow-Chinese，TensorFlow 中文资源精选，官方网站，安装教程，入门教程，实战项目，学习路径。QQ群：522785813，微信群二维码：http://www.tensorflownews.com/

awesome-web-scraping

List of libraries, tools and APIs for web scraping and data processing.

azimuth

Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency

baidupcs

百度网盘命令行工具。The terminal utility for Baidu Network Disk.

bash-it

A community Bash framework.

bayesprism

a fully Bayesian approach to deconvolve tumor microenvironment

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

bcftools

This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

bedtools2-cygwin

A powerful toolset for genome arithmetic.

beetl

BEETL