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amp_phase1_ra

:ear_of_rice: Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.

awesome-courses

:books: List of awesome university courses for learning Computer Science!

boolode

Git Repo for simulating Boolean Models

causality

Kaggle's Causality Challenge Solution for team FirfiD

dash-recipes

A collection of scripts and examples created while answering questions from the greater Dash community

deseq2-matlab

A version of DESeq2 implemented in matlab

gabi

Genome Annotation using Bayesian Inference (GABI)

hicplus

HiCPlus algorithm from https://github.com/zhangyan32/HiCPlus with minor changes

iclr2019

icml18-jtnn

Junction Tree Variational Autoencoder for Molecular Graph Generation (ICML 2018)

molecular-dynamics-study-of-energy-and-crystal-conformation-of-argon-gas

multiscale-densenet-gan

Multiscale DenseNet GAN in order to produce effective embeddings

ngsqualitytester

Test the quality of the samples in an Next Generation Sequencing dataset

nucleosoms-spacing-periodicity-analysis-with-wavelet

Analysis of the nucleosoms local spacing periodicity using wavelet

pyscenic

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.

pythontricks

Some tricks in python, harvested from experiments

react-flats

reinforcementlearning

Reinforcement Learning

scholarly

Retrieve author and publication information from Google Scholar in a friendly, Pythonic way

segregation-in-a-vibrated-granular-environment

seq2seq_nucleosom

Inrference of nucleosom density from DNA sequence

sequence-embedding

Find an embedding for DNA motifs

shrec-exented

Shortest Path Reconstruction algorithm extended with different dimensionality reduction methods and tunable imputation parameter

tfanalysis

Analysis of the TF using FIMO and HOMOCOCO v10 database

tools-convert-genomic-data-format

Multiples tools to convert NGS files to python matrix

zinb-peakcaller