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agfusion

Python package to annotate and visualize gene fusions.

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

cbioportal

cBioPortal for Cancer Genomics

china_city_dataset

**城市数据集

cloc

cloc counts blank lines, comment lines, and physical lines of source code in many programming languages.

comut

CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots

cromwellonazure

Microsoft Genomics supported implementation of the Broad Institute's Cromwell workflow engine on Azure

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

dna-seq-gatk-variant-calling

This Snakemake pipeline implements the GATK best-practices workflow

eecs598

git_doc

git using experiences

hacker-laws-zh

💻📖对开发人员有用的定律、理论、原则和模式。(Laws, Theories, Principles and Patterns that developers will find useful.)

handson-ml

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in python using Scikit-Learn and TensorFlow.

imonitor

This script use to analyze the immune repertoire sequenced by high throughtput sequencing

impact-pipeline

Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay

jaylanliu.github.io

jupyter-web-report

learn-wdl

Educational materials for learning WDL

learnpython

以撸代码的形式学习Python

mutscan

Detect important mutations by scanning FastQ files directly

nnctn

nn-based cancer type Chinese specification normalization and trace

nucleus

Python and C++ code for reading and writing genomics data.

onenote-markdown

pandoc-examples

pydata-book

Materials and IPython notebooks for "Python for Data Analysis" by Wes McKinney, published by O'Reilly Media

python

All Algorithms implemented in Python

python_biologist

Python Programming for Biologists

pywebio

Write interactive web app in script way.

s3fs

S3 Filesystem

sampleproject

A sample project that exists for PyPUG's "Tutorial on Packaging and Distributing Projects"