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Hi there 👋

This is Xiaotao Shen.

👤 About me

I am a Nanyang Assistant Professor (Tenure Track) at Lee Kong Chian School of Medicine, Nanyang Technological University Singapore. My overarching research interests are bioinformatics algorithms development for multi-omics data and their application to precision medicine. Specifically, I am interested in bioinformatics algorithm development, including 1) Comprehensive analysis workflow and deep learning for LC-MS data, 2) Metabolic network analysis, 3) Wearable and multi-omics data integration, and 4) microbiome and metabolome data integration. I also employed the developed bioinformatics algorithms as a unique systems biology approach to study the potential biomarkers and mechanisms of 1) pregnancy and related diseases, 2) aging and related diseases, and 3) cancer.

  • 💬 Ask me about metabolomics, bioinformatics, computational biology, and systems biology.

📥 Contact me

💻 Project

  1. tidymass project tidymass.org
  2. deepPsedoMSI project deeppseudomsi.org
  3. tidymicrobiome project tidymicrobiome.org
  4. tidywearable project tidywearable.github.io

📚 Statistics

Xiaotao Shen's Github Stats

Google Scholar

Xiaotao Shen's Projects

adaflow icon adaflow

Data analysis workflow for proteomics data.

bookdown icon bookdown

Authoring Books and Technical Documents with R Markdown

clusterprofiler icon clusterprofiler

:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters

ctsgetpy icon ctsgetpy

Python interface to Chemical Translation Service (CTS)

dbparser icon dbparser

Source code for the R package, "dbparser" (i.e. DrugBank Parser)

deepms icon deepms

Deep learning for MS data analysis

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