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Jiecong Lin's Projects

awesome-crispr icon awesome-crispr

List of software/websites/databases/other stuff for genome engineering

convolutional-kans icon convolutional-kans

This project extends the idea of the innovative architecture of Kolmogorov-Arnold Networks (KAN) to the Convolutional Layers, changing the classic linear transformation of the convolution to learnable non linear activations in each pixel.

crispr_gan icon crispr_gan

Generative adversarial network for CRISPR OT detection

crispr_net icon crispr_net

A Recurrent Convolutional Network Quantifies CRISPR Off-target Activities with Indels and Mismatches

crisprattention icon crisprattention

An artificial intelligence approach for gene editing off-target quantification: convolution neural network designs and considerations

deepmotifsyn icon deepmotifsyn

A deep learning approach to synthesize heterodimeric DNA motifs

deepstarr icon deepstarr

Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Drosophila melanogaster S2 cells

epinformer icon epinformer

code to run EPInformer for gene expression prediction and gene-enhancer links prioritization

grelu icon grelu

gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.

sei-framework icon sei-framework

code to run sei and obtain sei and sequence class predictions

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