jashapiro Goto Github PK
Name: Joshua Shapiro
Type: User
Company: Childhood Cancer Data Lab, Alex's Lemonade Stand Foundation
Twitter: jashapiro
Joshua Shapiro's Projects
alfred-audio-switcher
Alfred Workflow for Quickly Switching Audio Input and Output Devices
bedtools2
bedtools - the swiss army knife for genome arithmetic
biocs
Course materials for Bio/CS intro course
crosssim
Some python classes for simulating genetic crosses
cs-ap-analysis
Computer Science AP test analysis
faststructure
A variational framework for inferring population structure from SNP genotype data.
ggplot2
An implementation of the Grammar of Graphics in R
jashapiro.github.io
openpbta-analysis
The analysis repository for the Open Pediatric Brain Tumor Atlas Project
openpbta-manuscript
The manuscript repository for the Open Pediatric Brain Tumor Atlas Project
openscpca-analysis
An open, collaborative project to analyze data from the Single-cell Pediatric Cancer Atlas (ScPCA) Portal
outputshare
A little site for sharing output notebooks etc.
precommit
pre-commit hooks for R projects
refgenie
Reference genome resource manager
shapbio-academic
shapbiomisc
Miscellaneous scripts and R code for biological applications.
snphylo
A pipeline to generate a phylogenetic tree from huge SNP data
toycode
Bits of misc code for fun
usefulaf
Useful scripts and tools related to alevin-fry
user_guide
The CWL v1.0 user guide
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