jakechamblee Goto Github PK

bprom_to_gff3_converter

Converts the string output of BPROM, a promoter prediction software tool, to the GFF3 file format. Used in a CPT Galaxy phage genomics workflow

fitness_tracker

Fitness web app that automatically stores, tracks and visualizes your progress. Built using Django. Primarily a practice project but functional.

kaggle

Notebooks for Kaggle competitions and datasets

lysis-curve

A package which extends Plotly to generate dynamic bacterial growth curves. Has arguments for automated grouping, annotations, titles and subplotting in a single function

predicting-housing-prices-using-linear-regression

Data analysis / machine learning practice project

r_practice

rosalind-bioinformatics-scripts

Scripts created to solve Rosalind bioinformatics problems.

spanin_data_corrections

Purpose of this notebook was to identify and fix discrepancies between an internal dataset of spanin proteins which contained CDS calls that did not yield the expected protein sequence when translated using the genome in genbank. Often due to genome updates or amino acid indels.

training-material

A collection of Galaxy-related training material