jackcurragh Goto Github PK

animating-rdgs

awesome-riboseq

A list of bioinformatic tools for working with Ribo-Seq data

bam-parsing-benchmark-python

Experiments in parsing Binary Alignment Maps (BAMs) in python

collapse-fastq

Fetch FASTQ files, clean and collapse duplicated reads

crt_learning

Repo for CRT Genomic Data Science student led group learning

custom-nf-core-modules

Modules directory for custom nf-core modules that cannot be added to main nf-core

darned

DAtabase of RNA EDiting

ensembl-mirna-nf

miRNA Detection workflow developed for genebuild team at Ensembl

ensembl-selenoproteins

Standalone Nextflow Pipeline for the annotation of Selenoproteins @ Ensmbl

gencode-mouse-orfs

Pipeline used to detect ORFs from Mouse Ribo-Seq during time at EBI/Gencode

get-rpf

Extract just the Ribosome Protected Fragment (RPF) from Ribo-Seq Reads

gwips_trips_pipe

Pipeline for preparing public Ribo-seq data for publication of GWIPS-Viz and TRIPS-Viz

h3abionet-ml-glossary

The ML Glossary developed by H3ABioNet

historicgraves

Repo for Work done for Historic Graves Project

index-construction

Automated construction of bowtie indices

interactive-charts-for-frontend-data-visualization-using-flask-and-d3js

jackcurragh.github.io

Jack Tierney's GitHub Projects

jellyfish

A fast multi-threaded k-mer counter

lapti-docs

linkfree

Connect to your audience with a single link. Showcase the content you create and your projects in one place. Make it easier for people to find, follow and subscribe.

markdown

A Python implementation of John Gruber’s Markdown with Extension support.

metric-analysis

Notebooks for the analysis of Ribo-Seq QC Metrics

mscthesis2020

This repo contains the code for my MSc reseach project conducted under the supervision of Prof. Pasha Baranov @ UCC.

nextflow-plugins

Nextflow plugins index repository

nextflow-template

Template repository for setting up new Nextflow pipelines

nf-core-riboseq

Initial setup of nf-core Ribo-Seq pipeline

nf-core-test-datasets

Test data to be used for automated testing with the nf-core pipelines

nf-core-website

Code and files for the main nf-core website.

nf-modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

overlapping-orfs

Scripts for exploring the presence of overlapping ORFs in reference transcriptomes