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Issar Arab's Projects

ann-solo icon ann-solo

Spectral library searching using approximate nearest neighbor techniques.

casanovo icon casanovo

De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model

ctoxpred icon ctoxpred

Comprehensive cardiotoxicity prediction tool of small molecules on three targets: hERG, Nav1.5, Cav1.2

ctoxpred2 icon ctoxpred2

Comprehensive cardiotoxicity prediction tool of small molecules on three targets: hERG, Nav1.5, Cav1.2

dynamicsql icon dynamicsql

The repository shows the power of SQL in creating parametrized SQL scripts which might allow you to combine similar, yet different, scripts to perform tasks in one single SQL script based on input parameters.

epsapg icon epsapg

EPSAPG: An Extensive Protein Sequence Alignment Profiles Generator Pipeline Combining MMseqs2 and PSI-BLAST

ml-results-analysis-notebooks icon ml-results-analysis-notebooks

This repository showcase code for visualization and analysis to reproduce the presented results in the paper for semi-supervised rescoring in ANN-SoLo

pevolm icon pevolm

Protein Sequence Evolutionary Information Language Model

projectmanagementreportingsoftware icon projectmanagementreportingsoftware

This repository contains a set of useful python scripts implemented to support the work of project managers/team leads keeping track of their teammembers closed taks, vacation and absences declarations, and time spent in each task/project. The scripts pull customized reports from the 3 team managment web services: ClickUp, Toggl, and TimeButler.

scms icon scms

Spectra Complexity Metric System (SCMS): Giving the path to a Java project, the tool compiles a taxonomy of all class or all method level complexity metrics based on statement level metrics and more.

seqvec icon seqvec

Modelling the Language of Life - Deep Learning Protein Sequences

toxtree icon toxtree

ToxTree is a descriptor-based machine learning model to predict hERG and Nav1.5 cardiotoxicity of a molecular compound at the outset of drug development process.

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