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actg-lock

An i3lock lockscreen template. When you lock your screen, you can see the DNA sequence flowing in the matrix way.

adv_binf_2021_week1

Teaching material used in the "Advanced Bioinformatics for Next-Generation Sequencing" class, University of Copenhagen, 2021

angsd-troubleshooting-guide

angsdgui

angsdGUI is a web user interface for angsd.

awesome-profile-readme-templates

A collection of awesome readme templates to display on your profile

bash-functions

Time saver automatization functions to add your bashrc

bash-script-generator

Generate bash scripts with pre-written header and open with vim to start coding immediately.

best-free-resources

Best resources (websites, youtube channels, videos, notes etc.) I use for learning awesome stuff!

bioconda-recipes

Conda recipes for the bioconda channel.

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

cheatsheets

compevo-internship

This repo contains some notes from my internship (2018) at CompEvo (http://compevo.bio.metu.edu.tr/)

copenhagen-popgen-course

Teaching materials for Copenhagen course in high throughput sequencing data for population genetics

cswr

Computational Statistics with R

cswr22_group2

Repository for the presentation of CSwR 2022 class group 2.

cv

Isin Altinkaya's Curriculum Vitae.

datasciencecourse

decluster_paper_scripts

Pipeline and code snippets used in decluster paper analyses

gargammel

gargammel is an ancient DNA simulator

gc-content

A python function for calculating GC content using eigenstrat type ancient DNA .geno and .snp files. Note: This code is very old and wrote it when I was a total newbie. Might delete it later

gdrive-cli-builder

Build GDrive CLI (https://github.com/gdrive-org/gdrive) with your own credentials using GitHub Actions

gitgpt

Make ChatGPT write commit messages for you

google-slides_scripts

because why not

gptchatter

An experimental and unofficial wrapper for interacting with OpenAI GPT models in R.

gridtr

R package for Henderson (1961)'s Turkey grid square system.

hesaplamali_biyoloji_ve_biyoinformatige_giris_2020

05.02.2020 tarihinde düzenlenen 5. Hacettepe Biyoloji ve Uygulamaları Kongresi dahilindeki "Hesaplamalı Biyoloji ve Biyoinformatiğe Giriş" isimli çalıştayına ait ders notları ve verileri içerir. (Lecture notes and datasets for the Introduction to Computational Biology and Bioinformatics workshop, in Turkish)

hla

xHLA: Fast and accurate HLA typing from short read sequence data

hmmploidy

A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models

i3blocks

i3blocks scripts written by Işın Altınkaya.

i3gcalendar

A script to see the closest event in your Google Calendar on your i3blocks bar.