Related Issues (20)
- AbsQuant SWF: filter for non-zero expression HOT 1
- SWF: unify true positive calculation
- Execution workflow: TAPAS - report Format 04 BED file in workflow (per-PAS fractional relative usage)
- [Bug Fix] IsoSCM identification output should be from compare step HOT 1
- Bug: DaPars file not found error in postprocessing step when using huge sample file
- Bug: QAPA error converting string "NA" to float when calculating PPAU
- Bug: GETUTR file not found error in postprocessing step when using huge sample file
- Execution workflow update: IsoSCM doesn't run with reverse_forward and unstranded combination
- Execution workflow update: enable Singularity option for TAPAS
- Execution workflow: GETUTR - report Format 04 BED file in workflow (per-PAS fractional relative usage)
- chore: remove unnecessary requirement in identification swf
- feat(Execution workflows / Utils): making RefSeq annotations work for QAPA and PAQR. HOT 3
- feat(Summary workflow): check that PAS are reported as single nucleotide in input bed
- SWF: make output jsons OEB compatible HOT 1
- fix: remove AUC metric
- fix: Update OEB event Ids in SWFs
- fix: remove `event_date` from SWFs
- chore: migrate containers from dockerhub.io/apaeval to biocontainers
- docs: add missing contributors
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