[Bug report] - phy_launcher.py error about iblenv HOT 6 CLOSED

It seems the numba package is not installed on your computer.

The conda environment has been updated recently, so it needs a refresh, in a terminal,

• cd to the iblenv repository
• activate the environment
• update it: conda env update --file iblenv.yaml --prune

Then restart the Python console / IDE.
Let us know if it still shows this error.

from iblenv.

get the new error below after update iblenv:

**
Traceback (most recent call last):
File "phy_launcher.py", line 100, in
launch_phy(str(args.probe_label), eid=str(args.eid))
File "phy_launcher.py", line 73, in launch_phy
plugin_dirs=[Path(file).resolve().parent])
File "C:\Users\Julia Desk\int-brain-lab\phy\phy\apps\base.py", line 467, in init
super(TemplateMixin, self).init(*args, **kwargs)
File "C:\Users\Julia Desk\int-brain-lab\phy\phy\apps\base.py", line 878, in init
self.model = self._create_model(dir_path=dir_path, **kwargs) if model is None else model
File "C:\Users\Julia Desk\int-brain-lab\phy\phy\apps\template\gui.py", line 92, in _create_model
return TemplateModel(dir_path=dir_path, **kwargs)
File "C:\Users\Julia Desk\int-brain-lab\phylib\phylib\io\model.py", line 261, in init
self._load_data()
File "C:\Users\Julia Desk\int-brain-lab\phylib\phylib\io\model.py", line 270, in _load_data
self.spike_samples, self.spike_times = self._load_spike_samples()
File "C:\Users\Julia Desk\int-brain-lab\phylib\phylib\io\model.py", line 562, in _load_spike_samples
times = self._read_array(times_path)
File "C:\Users\Julia Desk\int-brain-lab\phylib\phylib\io\model.py", line 397, in _read_array
raise IOError()
OSError
**

from iblenv.

Ok that's a whole different issue.

Can you give us a bit more context ? What session are you trying to load ?
There is an issue when trying to load the sample waveforms for this session.

from iblenv.

about this session information: -e e535fb62-e245-4a48-b119-88ce62a6fe67 -p probe01 -s DY_013

from iblenv.

try to load another session (KS023, 2019-12-10, probe01 aad23144-0e52-4eac-80c5-c4ee2decb198), got this error below:

**
(iblenv) C:\Users\Julia Desk\int-brain-lab\iblapps\launch_phy>python phy_launcher.py -e aad23144-0e52-4eac-80c5-c4ee2decb198 -p probe00
Connected to https://alyx.internationalbrainlab.org as feihu
Traceback (most recent call last):
File "phy_launcher.py", line 100, in
launch_phy(str(args.probe_label), eid=str(args.eid))
File "phy_launcher.py", line 73, in launch_phy
plugin_dirs=[Path(file).resolve().parent])
File "C:\Users\Julia Desk\int-brain-lab\phy\phy\apps\base.py", line 467, in init
super(TemplateMixin, self).init(*args, **kwargs)
File "C:\Users\Julia Desk\int-brain-lab\phy\phy\apps\base.py", line 872, in init
assert self.dir_path.exists()
AssertionError
**

from iblenv.

Solved by pulling latest changes on develop branch of iblapps

cd iblapps
git checkout develop
git pull

from iblenv.