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Ingie Hong's Projects

ca_source_extraction icon ca_source_extraction

Matlab implementation of a source extraction and spike inference algorithm for large scale calcium imaging data analysis, based on a constrained matrix factorization approach.

deeplabcut icon deeplabcut

Markerless tracking of user-defined features with deep learning

facemap icon facemap

matlab GUI for unsupervised video analysis of rodent behavior (capable of processing multiple camera views)

gerardus icon gerardus

Computational biology and medical image processing scripts and programs

gogo-stages icon gogo-stages

Go^2-stages : Head-fixation stages for longitudinal in vivo two photon-imaging with submicron accuracy

normcorre icon normcorre

Matlab routines for online non-rigid motion correction of calcium imaging data

retinotopy icon retinotopy

Code for ISI image acquisition, stimulus presentation, and mouse visual area segmentation.

rnaseq_tutorial icon rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

stackgps icon stackgps

StackGPS: 3D registration on-the-fly for longitudinal two photon imaging with submicron precision

stringtie icon stringtie

Transcript assembly and quantification for RNA-Seq

vhlab_mltbx_toolbox icon vhlab_mltbx_toolbox

General purpose Matlab toolbox for neuroscience research created by Van Hooser lab and collaborators

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