adair-project

This repository contains the scripts used within ADAIR, an EU Joint Programme - Neurodegenerative Disease Research (JPND) project. This research was supported by the ADAIR project (grant #JPND2019-466-037)

apdb

appagato

an APproximate PArallel and stochastic GrAph querying TOol for biological networks

arena-idb

A platform to build human non-coding RNA interactions networks.

bioconda-recipes

Conda recipes for the bioconda channel.

crispritz

Tool package to perform in-silico CRISPR analysis and assessment

crisprme

cupcfs

curnet

An R package for graph traversing on GPU.

dataset-appagato

Dataset fot APPAGATO project

dataset-grapes

Dataset for GRAPES project

dbscan

Enhancing density-basedclustering, parameter reduction and outlier detection

dbstrata

A software system that implements the density-based clustering architecture together with several extensions able to boost the clustering performances and to efficiently identify outliers.

digas

A novel computational model for identifying genomic elements (from single exon to entire genomic regions) that are linked to a given phenotypic condition (i.e. a disease) investigating for single nucleotide polymorphisms (SNP).

easyback

Sequence similarity is more relevant than species specificity in probabilistic backtranslation

easycircr

esearch3d

focussearchcpp

C++ implementation of FocusSearch (originally implemented in Modula2 by Ullmann)

grafimo

Graph-based Finding of Individual Motif Occurrences

grapes

A software for parallel searching on biological graphs targeting multi-core architectures.

grapes-dd

graphfind

Enhancing graph searching by low support data mining techniques

graphgrepsx

GraphGrepSX is a querying system for databases of graphs. It is based on its predecessor GraphGrep.

graphgrepsxie

GraphGrepSX is a querying system for databases of graphs. It is based on its predecessor GraphGrep. This is a version that evaluate the labels on the edges

grass

igtools

Infogenomics Tools: A Computational Suite for Informational Analyses of Genomes.

imagen2019

Repository with all the necessary files and packages necessary to IEEE Imaging Genetics School 2019 in Verona

inbia

INBIA: a boosting methodology for proteomic network inference

infoasys

infomics

InfOmics website