Related Issues (20)
- Jaccard similarity differences when using information content HOT 2
- Breaking change in Synonymizer? HOT 3
- Document instructions for running the obographs-compliance suite HOT 4
- Update SemSimianImplementation and CLI to allow using custom IC maps and frequencies
- Pin ruff checks and codespell checks HOT 1
- Integrate notebooks into sphinx documentation (will break URLs) HOT 2
- Define behavior when conflicting idspaces are specified
- Calculating ICs with an annotation corpus as background is slow
- Making retrieval of axiom annotations for synonyms faster
- Allow passing in of ontology terms on command line when using enrichment in ontology-only mode
- Improve python level access to expression language
- Duplicated ClassCreation changes in CSV diff output HOT 5
- [OAK diff] Markdown output misformatted on `Mappings` section HOT 1
- vskit expander should support PVs in the MIxS label [id] style HOT 3
- add max depth for `vskit expand` HOT 1
- Sphinx documentation for CLI has disappeared from website HOT 1
- lexmatch --add-label option will update but not create new labels for sql backend
- `diff` in KGCL format generates `create None`. HOT 3
- Allow user to explicitly manage pystow cache (for downloaded sqlite dbs) HOT 1
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