Comments (2)
Sorry I believe the realigned BAM option has escaped our test attention for a while now. I confirm this is not working. We will fix or withdraw this feature in the next patch update.
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I've just pushed the v2.8.4 release which should fix this issue. Please re-open this ticket if you are still experiencing problems.
https://github.com/Illumina/strelka/releases/tag/v2.8.4
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Related Issues (20)
- CONFIGURATION ERROR: Reference genome mismatch:
- Which command to use for somatic calling and RNA sequencing?
- Long error using the code below
- How to detect somatic mutations with allele frequencies nearly 0.01? HOT 1
- Only the first Genome Segment called when putting entire chromosome in .bed file
- inconsistent reproducibility of variants
- Number of AD, ADF and ADR should be "R"
- Failing to index VCF file
- Incorrect handling of non-N nucleotides with quality zero after Q-score binning
- All variants being labeled as "LowEVS" HOT 1
- Meaning of taskExitCode -9 HOT 1
- Include AD (allelic depths) in format from somatic variants HOT 1
- Scripts to extract variant allele frequency (VAF) HOT 1
- Strelka filtering out important variant
- GQ and PL fields
- DEVELOPER_MODE is true in src release tarballs
- how to install strelka on linux? HOT 3
- call mtDNA variants from scRNA or WGS
- Python3 HOT 1
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