[E::idx_find_and_load] Could not retrieve index file about paragraph HOT 7 OPEN

@ivargr This solution fixed it for me! Many thanks!

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I encountered the same issue, both with the precompiled binaries for 2.4a and built from source. The produced variants.vcf.gz file is also missing the last several columns of the reference output.

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Same issue for 2.4a, any suggestions?

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I have also the same error, is there a workaround?

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Is it possible that this bug appears only if executing in a folder where there was already a prior execution of the tool? I am testing this right now, will have the result in some hours, but from the looks of line [https://github.com/Illumina/paragraph/blob/e805e261336117a0c6901cdb3d61fd9d7d464611/src/python/bin/multigrmpy.py#L339], if the problematic file is present, it seems to take precedence over the input one, maybe explaining why I did not encounter the error before.

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I also encountered the same bug. -_-

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I also encountered the same problem, both when using the test data and when using other data. I think adding this after line 58 in multigrmpy.py should fix the problem:

 pysam.tabix_index(vcf_with_event_ids_path, preset="vcf", force=True)

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