igorpisarev Goto Github PK

bdv-fusion

Use Big Data Viewer to fuse tile configurations on the fly

bigcat

Collaborative volume annotation and segmentation with BigDataViewer

bigdataviewer-core

ImgLib2-based viewer for registered SPIM stacks and more

bigdataviewer-vistools

Helpers to use BigDataViewer as a quick visualization tool in other projects.

bigstitcher

ImgLib2/BDV implementation of Stitching for large datasets

bigwarp

A tool for manual pointwise deformable registration using bigdataviewer.

fiji

A "batteries-included" distribution of ImageJ :battery:

imagej-ops

ImageJ Ops: "Write once, run anywhere" image processing

imglib2

A generic next-generation Java library for image processing

imglib2-algorithm

Image processing algorithms for ImgLib2

imglib2-cache

Cache interfaces and java.lang.ref based implementation.

imglib2-realtransform

label-utilities

Stuff like label interpolation

label-utilities-n5

label-utilities-spark

list-of-update-sites

The update sites ImageJ knows about automatically

mpicbg

Fiji module for image transformation and related algorithms

n5

Not HDF5

n5-blosc

Blosc compression for N5

n5-hdf5

Best effort N5 implementation on HDF5 files (despite the irony).

n5-ij

ImageJ convenience layer for N5

n5-imglib2

n5-label-multisets

n5-utils

simple standalone BigDataViewer for multiple N5 (or HDF5) datasets

n5-zarr

Zarr filesystem backend for N5

ops-experiments

EXPERIMENTAL repository for exploring Ops approaches, algorithms, etc.

paintera

paintera-conversion-helper

Script to assist conversion of n5 datasets to paintera-friendly formats

pom-scijava

Friendly base POM for all SciJava-based software

pom-scijava-base

Low-level base POM for all SciJava-based software