igorhut Goto Github PK

ads1-notebooks

Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing

ads1-slides

Slides for Algorithms for DNA Sequencing Coursera class

algorithm-problem-solutions

My solutions to problems from ROSALIND, Project Euler, and courses I have taken. This includes my own implementations of various data structures.

alldata247

anfis

An adaptive network-based fuzzy inference system (ANFIS) for Breast Cancer Classification

ase_mbased

Executable R script for ASE with MBASED

awesome-rshiny

An awesome R-shiny list!

ballgown

Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.

ballgown_code

analysis code used in Ballgown paper

bash-oneliner

Bash Oneliner will focus on bash commands for parsing plain text and biological data, which usually are tsv files(tab-separated values); some of the commands are for Ubuntu system maintaining. I apologize that there won't be any citation of the code, but they are probably from dear Google and Stackoverflow. Not all the code here are oneliner (if the ';' counts..). English and bash are not my first language, so... correct me anytime, tks!!

bds-files

Supplementary files for my book, "Bioinformatics Data Skills"

bioinformatics_1

Repo for the first course in Bioinformatics Specialization by UCSD - Finding Hidden Messages in DNA (Bioinformatics I)

blog

containerit

Package an R workspace and all dependencies as a Docker container

containers

Bioinformatics containers

coursera-ads

Solutions to Algorithms for DNA Sequencing

coursera_statistical_inference

Repo for Coursera Statistical Inference course

courses

Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

datasciencecapstone

Capstone Project for Johns Hopkins University's Data Science Specialization on Coursera.org

datasciencespcoursenotes

Compiled Notes for all 9 courses in the Coursera Data Science Specialization

datasciencespecialization.github.io

http://DataScienceSpecialization.github.io

datasharing

The Leek group guide to data sharing

ddp_by_coursera

Repo for DDP by Coursera

ddp_shiny_app

Repo containing simple Shiny app as a final project for DDP course by John Hopkins and Coursera

deep-review

A collaboratively written review paper on deep learning, genomics, and precision medicine

deeplearningpython35

neuralnetworksanddeeplearning.com integrated scripts for Python 3.5.2 and Theano with CUDA support

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

developing_data_products

Developing Data Products Course from the Johns Hopkins Data Science Lab

dragonn

A toolkit to learn how to model and interpret regulatory sequence data using deep learning.

elanfis

ELANFIS ( Extreme Learning Adaptive Neuro-Fuzzy Inference System)