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betterpython

Code examples for my Write Better Python Code series on YouTube.

bioconda-recipes

Conda recipes for the bioconda channel.

bottrackergpu

Video input processing to detect robots and ball from a robot soccer game. Using OpenCV gpu module(now cuda module) for blob detection.

clean_reads_wrapper

Galaxy wrapper for reads filtering tool.

consensus_sequence_ena_galaxy

Galaxy tool wrapper to submit assembly consensus sequences to ENA using webin cli

crispresso2_wrapper

Galaxy wrapper for CRISPResso2

data_manager_fetch_gff

Galaxy Data Manager to fetch gene annotation files

data_manager_fetch_tx2gene

Load tx2gene table with transcript to gene tables or GTF/GFF file.

data_manager_salmon_index_builder

dotfiles

Config files: vimrc, bashrc, zshrc ...

ena-upload-cli

ENA upload tool - script your Open Data upload to the European Nucleotide Archive

galaxy

Data intensive science for everyone.

galaxy-hub

Galaxy Community Hub

galaxy-provenance-capture

Retrospective provenance capturing from Galaxy workflow invocations

galaxy_data_management

Adding genomes and genome information to Galaxy

galaxy_tools_wrappers

Staging area for Galaxy wrappers

galaxytools

:microscope::books: Galaxy Tool wrappers

galaxywrappers

Collection of Galaxy tool wrappers by me

genomes_to_galaxy

Scripts to preprocess genomes+annotation, automatically load them to a Galaxy instance and build the corresponding indexes. This repo also contains the URLs for all preprocessed plants genomes used at PSB-VIB

golang-gx-evaluation

Load Galaxy based tool definitions and evaluate them to get an executable task, using a provided key-value map to resolve inputs.

idc

Intergalactic (reference) Data Commission

influxdb-python

Python client for InfluxDB

involucro

:whale: Build and Deliver Software with Containers

kma

Keep Me Around: Intron Retention Detection

literature-rev

literature-review

Lit review for my PhD

pastorius

Molecular Dynamics simulation on GPUs using table-lookup to calculate L-J potential.

patena

Rational design of protein linkers

plantref

Refgenieserver content repository for plant genomes server

realtime

Informe del trabajo final de Diseño de sistemas de Tiempo Real (bottrackerGPU)