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annoy

Approximate Nearest Neighbors in C++/Python optimized for memory usage and loading/saving to disk

awesome-single-cell

List of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

benchmark-data-levine-32-dim

R code to prepare 32-dimensional CyTOF benchmark data set from Levine et al. (2015), for testing high-dimensional clustering algorithms

bering.rna

bravetools

A tool to build, deploy, and release any environment using System Containers.

dirichlet_python

doccano

Open source text annotation tool for machine learning practitioner.

finetune

Scikit-learn style model finetuning for NLP

gasub

R package for extraction of active subnetworks using a global search algorithm

homebrew-core

🍻 Default formulae for the missing package manager for macOS (or Linux)

isofor

Isolation Forest implementation in R

label-studio

Label Studio is a multi-type data labeling and annotation tool with standardized output format

largevis

Sklearn style cython extension around the LargeVis Algorithm

largevis-r

An implementation of the largeVis algorithm for visualizing large, high-dimensional datasets, for R. Extra support is added for reproducible embeddings by setting internal random seeds

lime

Local Interpretable Model-Agnostic Explanations (R port of original Python package)

ml-annotate

Use ML-Annotate to label data for machine learning purposes

ml-from-scratch

Bare bones Python implementations of some of the fundamental Machine Learning models and algorithms.

palladium

Framework for setting up predictive analytics services

porto

Yet another Linux container management system

pymatch

pyplot-themes

Easily set themes that automatically apply to matplotlib, seaborn, and pandas plots.

scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

simpletransformers

Transformers for Classification, NER, QA, Language Modelling, Language Generation, T5, Multi-Modal, and Conversational AI

tfcausalimpact

Python Causal Impact Implementation Based on Google's R Package. Built using TensorFlow Probability.

trustscore

To Trust Or Not To Trust A Classifier. A measure of uncertainty for any trained (possibly black-box) classifier which is more effective than the classifier's own implied confidence (e.g. softmax probability for a neural network).

viewers

OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages

vim-conda

Change conda environments in the Vim editor (with Jedi-vim support)

wordmap

Visualize large text collections with WebGL

xhyve

xhyve, a lightweight OS X virtualization solution