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Name: Mikael Huss
Type: User
Company: Codon Consulting
Twitter: mikaelhuss
Location: Stockholm
Name: Mikael Huss
Type: User
Company: Codon Consulting
Twitter: mikaelhuss
Location: Stockholm
Metagenomics Workshop 2014-5-21 to 2014-5-23 at SciLifeLab, Stockholm
testing out parallelization
TensorFlow autoencoder implementation with ASCII visualization of reconstruction progress
Useful bioinformatics code, primarily in Python and R
Companion repository to blog post "The big picture of public discourse" where we analyze Swedish Twitter data from 2015
Freelance bioinformaticians directory
Code for paper "Evolutionary history of host use, rather than plant phylogeny, determines gene expression in a generalist butterfly" by M Celorio-Mancera et al., (2016) BMC Evolutionary Biology 16:59. doi: 10.1186/s12862-016-0627-y
Course homepages for some of the courses given at SciLifeLab
Team repository for the Curious Crows for Hack4Sweden 2016
A collaboratively written review paper on deep learning, genomics, and precision medicine
A list of deep learning implementations in biology
A very simple framework for state-of-the-art Natural Language Processing (NLP)
Case study for data carpentry class on predicting differential gene expression based on genomic features
Scripts for obtaining max and mean PhastCons46way for a GFF of human genomic coordinates
Script for scoring entries in a GFF file for coding potential using PhyloCSF score files
Testing LSTM architectures with Valohai
Notebooks with examples of using LIME on tabular, text and image data, presented at Machine Learning Stockholm 2017-09-27
python scripts for proteogenomics analysis
Code for the paper "Assessing the consistency of public human tissue RNA-seq data sets" (Danielsson at al, Briefings in Bioinformatics 2015, 16 (6): 941-949)
Sample code for the Flask tutorial in the VS Code documentation
R code for working with RNA-seq count and FPKM data (filtering, visualization, outlier detection etc.)
Script that searches a set of BAM files for RNA-seq alignments that match a provided set of peptide coordinates.
Helper scripts for NGS data processing
Misc code snippets for Science For Life Laboratory
Shiny version of code in blog post https://www.r-bloggers.com/image-classification-in-r-using-trained-tensorflow-models/
Code samples from Explainable ML in R talk at Stockholm R useR group 190123
Stacked Denoising AutoEncoder based on TensorFlow
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.