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blackman_et_al_gfossarum_uk

Data processing workflow and supplementary data for Blackman et al. - First record of GAMMARUS FOSSARUM (Koch, 1836) (AMPHIPODA, GAMMARIDEA) in the UK - a new non-native species discovered using Environmental DNA

curated_reference_databases

This repository contains the complete description of how we produced the curated reference databases for the studies in Evolutionary and Environmental Genomics Group (@EvoHull)

diplotaxodon_twilight_rad

Data repository accompanying the paper 'The genomic basis of cichlid fish adaptation within the deep water 'twilight zone' of Lake Malawi' by Hahn et al.

dockerize

This repository contains contexts for Docker images build for miscellaneous pieces of bioinformatics software.

egrep

Repository for course 'Environmental Genomics Research Projects (egrep)'

egrep-2016

Repository for course 'Environmental Genomics Research Projects (egrep)' 2016 @EvoHull

genomisc-training

Miscellaneous materials (tutorials, exercises, testdata) to develop essential 'survival'-skills in bioinformatics.

griffiths_et_al_2020_fens_edna

Data processing workflow and supplementary info for: Griffiths et al. (2020) - Environmental DNA metabarcoding provides enhanced detection of the European eel Anguilla anguilla and fish community structure in pumped river catchments

haenfling_et_al_2016

Data processing workflow and supplementary data for Haenfling et al. 2016 - Environmental DNA metabarcoding of lake fish communities reflects long-term data from established survey methods

handley_et_al_2019

Data processing workflow and supplementary data for Handley et al. 2019 - Temporal and spatial variation in distribution of fish environmental DNA in England’s largest lake

harper_et_al_2018

harper_et_al_2018_mammal_edna_metabarcoding

harper_et_al_2020_crucian_carp_impact_invertebrates_conventional_molecular_tools

harper_et_al_2020_mustelid_diet_metabarcoding

hulluni-bioinformatics.github.io

kitson_et_al_nmb

Repository contains scripts and supplementary data for Kitson et al. - Nested metabarcoding manuscript

li_et_al_2018_edna_filtration

Data processing workflow and supplementary data for Li et al. 2018 - The effect of filtration method on the efficiency of environmental DNA capture and quantification via metabarcoding

li_et_al_2019_edna_dynamic

Data processing workflow and supplementary data for Li et al. 2019 - Limited dispersion and quick degradation of environmental DNA in fish ponds inferred by metabarcoding

li_et_al_2019_edna_fish_monitoring

Data processing workflow and supplementary data for Li et al. 2019 - Ground-truthing of a fish-based environmental DNA metabarcoding method for assessing the quality of lakes

metabarcode-course

EvoHull bioinformatics and metabarcoding repository

metabarcode-course-2016

Data for 'Reproducible metabarcoding course' 2016 @EvoHull

metabeat

Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool

mig-phylogenomics

MIG Meloidogyne species phylogenomics and and ploidy analysis

misc

General use python objects

nematoda-te-evolution

Analysis for the paper "Genetic drift, not life history or RNAi, determine long term evolution of transposable elements"

reprophylo

Reproducible Phylogenomics

reprophylodockerfile

reprophylogalaxy

A Galaxy instance with ReproPhylo tools

szitenberg_et_al_2014

te-search-tools

Python wrappers for programs that search for transposable elements