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arrm

causaljazz

A numerical solver for population dynamics in a causal framework.

clive

Neuromuscular model of the arm using OpenSim and MIIND

cyberelegans

Neuromechanical model of C. Elegans

elastica

Software to simulate the dynamics of filaments that, at every cross-section, can undergo all six possible modes of deformation, allowing the filament to bend, twist, stretch and shear, while interacting with complex environments via muscular activity, surface contact, friction and hydrodynamics.

isotask

Working files for modelling interneuron - motoneuron interactions during an isometric leg task

jlems

Java Interpreter for the Low Entropy Model Specification language

jneuroml

For more details see http://www.neuroml.org/neuroml2.php

miind

miind-a-model-agnostic-simulator-of-neural-populations

miind-ann

opensim-core

SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.

org.geppetto

Geppetto - Open Simulation Platform

org.geppetto.core

Geppetto core bundle

org.geppetto.frontend

Geppetto frontend bundle (Web Application)

org.geppetto.model.neuroml

NeuroML Model Bundle for Geppetto

org.geppetto.model.sph

PCI SPH Model Bundle for Geppetto

org.geppetto.samples

Sample simulations for Geppetto

org.geppetto.simulation

Generic simulation bundle for Geppetto

org.geppetto.simulator.jlems

jLEMS based simulator for Geppetto

org.geppetto.simulator.sph

SPH Simulator bundle for Geppetto

org.geppetto.solver.sph

PCI SPH Solver bundle for Geppetto

org.geppetto.templatebundle

org.geppetto.testbackend

org.neuroml.export

Export from NeuroML & LEMS

pop-dynamics

A general purpose solver for population dynamics.

rats

sibernetic

This is a C++/OpenCL implementation of the PCISPH algorithm supplemented with a set of biomechanics simulations related features applied to C. elegans locomotion

sibernetic_config_gen

Generation start scene configuration for PCI SPH solver

tvb-library

The science behind The Virtual Brain