hubmapconsortium Goto Github PK
Name: HuBMAP Consortium
Type: Organization
Bio: This is the GitHub organization for repos related to the work of the HuBMAP Consortium.
HuBMAP Consortium's Projects
3d-hra-ref-object-validation
HRA 3D Reference Object Validation Reports
airflow-dev
Configuration, workflows, and DAGs for the development instance of Airflow on HIVE infrastructure
antibodies-tsv-util
Package for cross-pipeline usage of `antibodies.tsv` contents
antibody-api
API for the Antibody DB.
api-base-image
asct-b-generator
CLI to convert a simple CSV file into ASCT+B format
asct-parser
asct-parser: Parse ASCT+B tables into two columns (+ label columns) for relation-validator.
asctb-appscript
Google Sheets tools to process the ASCT+B tables
asctb-azimuth-data-comparison
Comparing Azimuth data with ASCT+B Table data
asctb-ct-label-mapper
asctb-ct-label-mapper: A package to recommend controlled vocabulary for annotations of scRNA-seq datasets. and thereby enable cross-dataset or cross-experiment comparison of annotations.
asctb-figures
How to generate ASCT+B Graph Figures
asctb-ftu-mapping
ASCT+B to FTU Mapping
asctb2ccf
CLI to convert ASCT+B tables to CCF Biological Structure Ontology
automated-pipeline-testing
aws-api-gateway
API definitions, Lambda functions/authorizers/layer, and documentations to work with AWS API Gateway
azimuth-annotate
azimuth-mapping
azimuth_asctb_label_comparison
Azimuth ASCT+B label comparison
basic_mod
bubble-treemaps
ASCT+B visualization (using bubble-treemaps)
ccf
HuBMAP CCF Portal (DEPRECATED)
ccf-2d-reference-object-library
HRA 2D Reference Object Library (Source)
ccf-3d-reference-object-library
HRA 3D Reference Object Library (Source)
ccf-3d-registration
CCF-RUI: CCF Registration User Interface
ccf-asct-reporter
HRA ASCT+B Reporter
ccf-body-ui
ccf-body-ui in Unity
ccf-grlc
ccf-grlc: Useful SPARQL queries for HRA work + API via grlc.io
ccf-gtex-pilot
Project page for the CFDE IU-GTEx Pilot collaboration
ccf-ontology
CCF Ontology v2.x
ccf-rdf-writer
CCF RDF Writer
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