Giter Club home page Giter Club logo

Hunter Seabolt's Projects

genomeannotator icon genomeannotator

Pipeline for the identification of (coding) gene structures in draft genomes.

gibbs icon gibbs

A Perl module implementing a Gibbs sampler

hmm icon hmm

A Perl implementation of Hidden Markov Models

kmertk icon kmertk

A collection of bioinformatics scripts for operating with sets of k-mers derived from genome sequences.

kolander icon kolander

highly flexible sequencing read sieve for taxonomic filtering of next-generation sequencing data.

markov icon markov

A Perl implementation of discrete-time Markov chains

matrix_power_tools icon matrix_power_tools

A command-line set of power tools for matrix operations, including data munging, resampling, statistics, information content, and linear algebra.

metaxplore icon metaxplore

A modular bioinformatics pipeline to conduct basic, rapid data exploration of metagenomic sequencing data at a glance.

mlst icon mlst

A Perl module for multilocus sequence typing applications (MLST)

modules icon modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

nexus_utils icon nexus_utils

A collection of homebrew scripts for operating on Nexus-formatted biological sequence data

phoenix icon phoenix

🔥🐦🔥PHoeNIx: A short-read pipeline for healthcare-associated and antimicrobial resistant pathogens

rankgenes icon rankgenes

An old workflow for identifying genes whose phylogenetic signal closely matches that of WGS

rnaseq icon rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

tautyping icon tautyping

This pipeline identifies genes or genomic segments which most closely resemble the genome-wide phylogenetic signal of a given organism using the Kendall Tau rank correlation statistic

vectorborne_sir icon vectorborne_sir

Repo for CSE8803 course project covering extensions to vectorborne disease compartment models

viralrecon icon viralrecon

Assembly and intrahost/low-frequency variant calling for viral samples

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.