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allensdk

analyze_ic_openscope

analyze_ic_openscope_v240130

betaevents

script for detecting beta events in the prestimulus TFR

four_channel_mhz_led_driver

High Speed Four Channel LED Driver that can run up to 30A

gammaregularnonsensoryfastspikingneurons

graph_ensemble

Conditional random field models

gui

Software for electrophysiology data acquisition

identification-of-pattern-completion-neurons

Demo of Code: Identification of Pattern Completion Neurons in Neuronal Ensembles using Probabilistic Graphical Models, Journal of Neuroscience 2021

illusionopenscope

camstim illusory contour stimuli for OpenScope collaboration

mesoholo_onlineanalysis

mindreading

neurofinder

benchmarking challenge for finding neurons in imaging data

nma_timely_tigers

NMA class project on noise correlations and ANNs

psychtoolbox-3

Psychophysics Toolbox Version 3 (PTB-3) is a free set of Matlab and GNU Octave functions for vision and neuroscience research.

repeatedmeasures

MATLAB software for running psychophysics and motor control experiments

roimatchpub

Match suite2p ROIs between imaging sessions

signal-correlation

Code from Ozden, Sullivan, and others; 2006-2009

simpleclust

Manual spike clustering software for matlab

spine_analysis

stringer-pachitariu-et-al-2018b

Responses of 10,000 neurons to 2,800 natural images

suite2p

Tools for processing 2P recordings

suite2p-1

cell detection in calcium imaging recordings

swdb_2018

Course materials for the 2018 Summer Workshop on the Dynamic Brain

swdb_2018_tools

A collaborative Python package built by participants of the Summer Workshop on the Dynamic Brain

tutorial-unix-basics

Tutorial on the basics of UNIX using BCE