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anndata

Annotated data.

baylor-dicty

Analysis of Dictyostelium gene expression data

compass

In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes

gobi_2022

linkedin_scraper

A library that scrapes Linkedin for user data

my-first-java-application---a-simple-game

This is a simple game (with no game logic) that was build as my first java app for a school project.

opentsne

Extensible, parallel implementations of t-SNE

orange3

🍊 :bar_chart: :bulb: Orange: Interactive data analysis https://orange.biolab.si

orange3-bioinformatics

Bioinformatics add-on for Orange3

orange3-imageanalytics

🍊 :rice_scene: Orange3 add-on for dealing with image related tasks

orange3-network

🍊 🕸 Network analysis add-on for Orange data mining suite.

orange3-single-cell

🍊🔬 Orange add-on for gene expression of single cell data

orange3-timeseries

🍊 :chart_with_upwards_trend: Orange add-on for analyzing, visualizing, manipulating, and forecasting time series data.

retinal

scanpy

Single-cell analysis in Python. Scales to >1M cells.

scanpy-tutorials

Scanpy Tutorials.

scarches

Query to reference mapping for single-cell genomics

scib

Benchmarking analysis of data integration tools

scib-pipeline

Snakemake pipeline that works with the scIB package to benchmark data integration methods.

scorange-hugo

scOrange home page in hugo

scvi-tools

Deep probabilistic analysis of single-cell omics data

scvi-tutorials

Notebooks used in scvi-tools tutorials