Comments (1)
I think if you can check args.gpus
in the code. It suppose to be 3 if you add parameter correctly.
Alphafold's embedding presentations take up a lot of memory as the sequence length increases. To reduce memory usage, you should add parameter --chunk_size [N] and --inplace to cmdline or shell script ./inference.sh. The smaller you set N, the less memory will be used, but it will affect the speed.
from fastfold.
Related Issues (20)
- About the recycle dimension HOT 1
- No module named fastfold_layer_norm_cuda HOT 1
- Invalid resolution format: ['?'] HOT 5
- submit unsuccessfully HOT 4
- Would it be possible to run this locally in computers/laptops with nvidia cuda drivers+docker? HOT 3
- Core affinity issue HOT 1
- Cannot run perf.py in benchmark HOT 2
- Trouble Running Perf.py in Benchmark HOT 2
- KeyError: 'msa_mask' Issue
- Buggy scripts/download_all_data.sh
- About running time
- RuntimeError: CUDA error: CUBLAS_STATUS_INVALID_VALUE when calling `cublasGemmEx( HOT 2
- mmcif_cache HOT 8
- Inferring super large protein with reduced accuracy
- cuda error
- Error unrecognized argument for --uniref30_database_path
- environment.yml conda env has conflicts
- Request for guidance on generating fastfold training cache files HOT 1
- Installation failed ERROR: No matching distribution found for typing-extensions==4.3.0
- Could not run demo.py HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from fastfold.