Errors 308 and 277 during compilation about rs-gfatovcf HOT 3 OPEN

Hello @piosierra,

yes, these errors are due to the dependencies being outdated (the last update to this project was ~ 1.5 years ago).
I've updated the libraries with cargo update, and now it appears to compile correctly. I've also pushed these changes, so you can just pull to get the latest version with the updated dependencies.

Let me know if this fixes the issue.

from rs-gfatovcf.

Hello,
Thanks for the update.
I updated it but now I get these error with different GFAs. It is always this same error.

gfa_to_vcf -i component.0.gfa -o allX.vcf -p CM0120270.1
thread 'main' panicked at 'no entry found for key', src/variant_identification.rs:75:34
note: run with RUST_BACKTRACE=1 environment variable to display a backtrace

from rs-gfatovcf.

Hi again,
if possible could you please share the gaf you are using? If gaf is big (and has a complex structure) you are probably better off with vg deconstruct, as my tool is only guaranteed to work correctly on simpler gafs. I'd like to improve it in the future, but as of now I'm working on other projects.

from rs-gfatovcf.