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yanhong hong's Projects

bambu icon bambu

Reference-guided transcript discovery and quantification for long read RNA-Seq data

dock2interaction_profile icon dock2interaction_profile

This is a simple script to use [plip](https://github.com/pharmai/plip) to batch analysis of interactions between proteins and ligands that are results of smina (vina) docking.

dockpipe icon dockpipe

This is a whole pipeline for molecular docking and interaction analysis.

flair icon flair

Full-Length Alternative Isoform analysis of RNA

freddie icon freddie

Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing

igv-reports icon igv-reports

Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.

models2dock icon models2dock

This is an automated pipeline to fix models that generated by Modeller and use scripts to prepare the ligands and receptors for Autodock Vina.

porechop icon porechop

adapter trimmer for Oxford Nanopore reads

pygenometracks icon pygenometracks

python module to plot beautiful and highly customizable genome browser tracks

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