Comments (1)
Thanks for the bug report, they are extremely useful (especially while cazy_webscraper
is still in beta).
The issues was the result of line 77 in the setup.py
not having been updated to match the new program architecture.
The line has been updated to point to the correct file name for the main entry point (it now points to cazy_scraper
instead of cazy_webscraper
).
This should now be fixed in the new pypi release (v2.0.2).
In future, it is good practice to fill out the bug report form in full. This facilitates the reproducibility of what caused the issue to be raised, which in turn makes finding the possible cause of the issue far easier and significantly faster. Luckily, in this case I was able to reproduce the issue; however, with the information provided arguably your work is not reproducible. The screen capture of your terminal isn't displaying the standard output for a Linux system. If you were not using a POSIX os then that could have been a cause of the problem. Additionally, with no information provided about the virtual environment you are using, the issue could have been caused by import and/or version conflicts. Without that information up front we can't rule out or rule in a lot of possibilities without a lot of backwards and forwards via comments and often a lot of extra work and playing around our end, especially if we aren't able to reproduce the issue. Long story short, provide all the info necessary for reproducing your work, which makes likes life easier for everyone.
from cazy_webscraper.
Related Issues (20)
- Fix logger inheritance
- Use NCBI Tax IDs
- Bio.Entrez NotXMLError HOT 1
- Fails to retrieve data from UniProt
- Crashes when retrieving NCBI seqs: http.client.IncompleteRead
- Failing to retrieve UniProt data HOT 4
- API missing opt to include 'kingdoms' in output
- Update to `sqlalchemy` 2.x HOT 1
- Crashes when retrieving seqs from NCBI
- No PDB acessions matched and Retrieving no protein structure files HOT 3
- Unexpected error message when retrieving AA UniProt sequences HOT 2
- Add subcommands HOT 1
- Increase unit test coverage
- Crashing when retrieving taxs from NCBI HOT 6
- Incomplete read error HOT 3
- Reduced memory demand HOT 1
- Crashing when retrieving taxs from NCBI - perhaps related to #120 HOT 1
- cazy_webscraper - error downloading database HOT 1
- Error during retrieving taxa info from NCBI HOT 1
- Incorrect parsing of NCBI protein version accession
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from cazy_webscraper.