Using existing dataframe with UpSetR about upsetr HOT 8 CLOSED

I got this UpSet plot when using your data. I just made sure that the type of each binary column was an integer.

from upsetr.

could you send me a small snippet of the data frame so I could test it? It may have something to do with the types of your columns.

from upsetr.

Here's a quick csv output from the table I'm using:
final_MADS_upsetr.txt

from upsetr.

looks good! any tips on how to do that?

from upsetr.

for(i in 2:ncol(data)){ data[ , i] <- as.integer(data[ , i]) }

from upsetr.

With this I get a binary data frame of 1s and 2s and then
upset(data)
Error in start_col:end_col : argument of length 0

from upsetr.

for(i in 2:ncol(data)){ data[ , i] <- as.integer(data[ , i]) for(j in 1:nrow(data)){ data[ j, i] <- data[j, i]-1 } }

You're most likely getting 1's and 2's because the 0's and 1's from your data frame are factors.

from upsetr.

Thanks, I now see the graph but it only shows data from five columns (same as yours, but not showing Tuff, for example). How can I fix this up?

Solved - adding the following did it!

 sets=c("Amphibolite", "Basalt", "Coal", 
+ "Coal-Upper", "Dolomite", "Hematite_Granite", 
+ "High-calcite_clay", "mica_schist", 
+ "pegmatitic_granite", "Sandstone", "Shale", 
+ "Sub_bituminous_coal", "Tuff", "Volatile_bituminous_coal"))

from upsetr.