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awesome-machine-learning

A curated list of awesome Machine Learning frameworks, libraries and software.

bds-files

Supplementary files for my book, "Bioinformatics Data Skills"

bigdata-ecosystem

BigData Ecosystem Dataset

clinvar

This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file.

concise

Concise: Keras extension for regulatory genomics

coursera_capstone

Capstone Assignments for Coursera Data Science courses

courses

Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

d3

A JavaScript visualization library for HTML and SVG.

data-science-interview-questions-and-answers

Data science interview questions with answers. Not ideally (yet)

deep-learning-models

Keras code and weights files for popular deep learning models.

deeplearning-biology

A list of deep learning implementations in biology

deeplearningbook

MIT Deep Learning Book in PDF format

gatk-whole-genome-pipeline

End to end pipeline for calling variants against an entire genome

getting-started-with-genomics-tools-and-resources

Unix, R and python tools for genomics and data science

ggplot

ggplot for python

github-slideshow

A robot powered training repository :robot:

hail

Scalable genomic data analysis.

handson-ml

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in python using Scikit-Learn and TensorFlow.

hhtest

hhuang2018.github.io

hlawholegeneanalysis

ibm-advanced-data-science-specialization-coursera

Advanced Data Science Specialization by IBM

lasagne4bio

littleinferencebook

A book for the coursera statistical inference class

markdown-here

Google Chrome, Firefox, and Thunderbird extension that lets you write email in Markdown and render it before sending.

markdown-styles

Markdown to HTML generator and multiple CSS themes for Markdown

mr-data-converter

Takes CSV or tab-delimited data from Excel and converts it into several web-friendly formats, include JSON and XML.

mrc_book_en

mwas

Generic code for performing microbiome-wide association studies with a variety of models

myvcf

myVCF: a web-based platform for target and exome mutations data management